IL_8YDG_021

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8YDG|1|1|U|846, 8YDG|1|1|U|931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDG_021 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.2924

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

8YDG|1|1|A|844
8YDG|1|1|A|845
8YDG|1|1|U|846
8YDG|1|1|U|847
8YDG|1|1|C|848
*
8YDG|1|1|G|930
8YDG|1|1|U|931
8YDG|1|1|U|932
8YDG|1|1|A|933
8YDG|1|1|U|934

Current chains

Chain 1

23S rRNA

Nearby chains

Chain z

50S ribosomal protein L30