IL_8YDG_061
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 8YDG|1|1|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDG_061 not in the Motif Atlas
- Geometric match to IL_9E6Q_065
- Geometric discrepancy: 0.1248
- The information below is about IL_9E6Q_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
8YDG|1|1|A|1669
8YDG|1|1|C|1670
8YDG|1|1|U|1671
8YDG|1|1|A|1672
8YDG|1|1|G|1673
8YDG|1|1|G|1674
*
8YDG|1|1|C|1990
8YDG|1|1|U|1991
8YDG|1|1|G|1992
8YDG|1|1|U|1993
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
Coloring options: