IL_8YDH_044

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8YDH|1|1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDH_044 not in the Motif Atlas

Geometric match to IL_8B0X_107

Geometric discrepancy: 0.0782

The information below is about IL_8B0X_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

8YDH|1|1|C|1208
8YDH|1|1|U|1209
8YDH|1|1|G|1210
8YDH|1|1|C|1211
8YDH|1|1|G|1212
8YDH|1|1|A|1213
8YDH|1|1|A|1214
8YDH|1|1|G|1215
*
8YDH|1|1|U|1234
8YDH|1|1|G|1235
8YDH|1|1|G|1236
8YDH|1|1|A|1237
8YDH|1|1|G|1238

Current chains

Chain 1

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L20