IL_8YDH_164

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDH_164 not in the Motif Atlas

Geometric match to IL_8B0X_056

Geometric discrepancy: 0.1167

The information below is about IL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8YDH|1|3|C|1303
8YDH|1|3|G|1304
8YDH|1|3|G|1305
8YDH|1|3|A|1306
8YDH|1|3|U|1307
8YDH|1|3|U|1308
*
8YDH|1|3|A|1329
8YDH|1|3|U|1330
8YDH|1|3|G|1331
8YDH|1|3|A|1332
8YDH|1|3|A|1333
8YDH|1|3|G|1334

Current chains

Chain 3

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain X

30S ribosomal protein S19