IL_8YLR_019

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8YLR|1|2|U|313, 8YLR|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_019 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.1407

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8YLR|1|2|U|311
8YLR|1|2|A|312
8YLR|1|2|U|313
8YLR|1|2|C|314
8YLR|1|2|A|315
8YLR|1|2|A|316
*
8YLR|1|2|U|348
8YLR|1|2|U|349
8YLR|1|2|U|350
8YLR|1|2|C|351
8YLR|1|2|A|352
8YLR|1|2|A|353
8YLR|1|2|C|354
8YLR|1|2|G|355

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SV

Small ribosomal subunit protein eS8A

Chain SX

Small ribosomal subunit protein uS17A

Chain Sc

Small ribosomal subunit protein uS12A