IL_8YLR_056
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACCAC*GUCCCU
- Length
- 11 nucleotides
- Bulged bases
- 8YLR|1|2|C|1158, 8YLR|1|2|C|1159
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_056 not in the Motif Atlas
- Geometric match to IL_5TBW_062
- Geometric discrepancy: 0.3595
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8YLR|1|2|A|1157
8YLR|1|2|C|1158
8YLR|1|2|C|1159
8YLR|1|2|A|1160
8YLR|1|2|C|1161
*
8YLR|1|2|G|1616
8YLR|1|2|U|1617
8YLR|1|2|C|1618
8YLR|1|2|C|1619
8YLR|1|2|C|1620
8YLR|1|2|U|1621
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SL
- Small ribosomal subunit protein eS28A
- Chain Se
- Small ribosomal subunit protein eS26A
- Chain u
- Transfer RNA; tRNA
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