IL_8YLR_069
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 8YLR|1|2|U|1340
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_069 not in the Motif Atlas
- Homologous match to IL_8P9A_444
- Geometric discrepancy: 0.2669
- The information below is about IL_8P9A_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
8YLR|1|2|C|1339
8YLR|1|2|U|1340
8YLR|1|2|A|1341
8YLR|1|2|C|1342
*
8YLR|1|2|G|1383
8YLR|1|2|A|1384
8YLR|1|2|G|1385
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SG
- Small ribosomal subunit protein eS17A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SO
- Small ribosomal subunit protein RACK1
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