IL_8YLR_141
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8YLR|1|A|G|1236
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_141 not in the Motif Atlas
- Homologous match to IL_8P9A_283
- Geometric discrepancy: 0.2354
- The information below is about IL_8P9A_283
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16218.3
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YLR|1|A|G|1234
8YLR|1|A|U|1235
8YLR|1|A|G|1236
8YLR|1|A|G|1237
8YLR|1|A|C|1238
*
8YLR|1|A|G|1250
8YLR|1|A|A|1251
8YLR|1|A|A|1252
8YLR|1|A|U|1253
8YLR|1|A|C|1254
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein uL16
Coloring options: