IL_8YLR_159
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAUAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_159 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.1749
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8YLR|1|A|A|1883
8YLR|1|A|A|1884
8YLR|1|A|U|1885
8YLR|1|A|A|1886
8YLR|1|A|A|1887
8YLR|1|A|U|1888
8YLR|1|A|G|1889
*
8YLR|1|A|C|2346
8YLR|1|A|U|2347
8YLR|1|A|A|2348
8YLR|1|A|U|2349
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain R
- Large ribosomal subunit protein uL22A
- Chain f
- Large ribosomal subunit protein eL31A
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