IL_8YLR_205

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8YLR|1|A|U|3056, 8YLR|1|A|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_205 not in the Motif Atlas

Homologous match to IL_8P9A_346

Geometric discrepancy: 0.171

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98200.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

8YLR|1|A|U|3054
8YLR|1|A|U|3055
8YLR|1|A|U|3056
8YLR|1|A|U|3057
8YLR|1|A|U|3058
8YLR|1|A|G|3059
*
8YLR|1|A|C|3084
8YLR|1|A|G|3085
8YLR|1|A|A|3086
8YLR|1|A|A|3087
8YLR|1|A|G|3088

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain Y

Large ribosomal subunit protein eL24A

Chain f

Large ribosomal subunit protein eL31A