IL_8YLR_210
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 8YLR|1|A|A|3180, 8YLR|1|A|A|3186, 8YLR|1|A|C|3206, 8YLR|1|A|U|3207, 8YLR|1|A|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_210 not in the Motif Atlas
- Homologous match to IL_8C3A_132
- Geometric discrepancy: 0.1599
- The information below is about IL_8C3A_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8YLR|1|A|U|3179
8YLR|1|A|A|3180
8YLR|1|A|C|3181
8YLR|1|A|G|3182
8YLR|1|A|A|3183
8YLR|1|A|A|3184
8YLR|1|A|U|3185
8YLR|1|A|A|3186
8YLR|1|A|A|3187
8YLR|1|A|G|3188
*
8YLR|1|A|C|3204
8YLR|1|A|G|3205
8YLR|1|A|C|3206
8YLR|1|A|U|3207
8YLR|1|A|G|3208
8YLR|1|A|A|3209
8YLR|1|A|A|3210
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain H
- Large ribosomal subunit protein eL6B
- Chain K
- Large ribosomal subunit protein uL6A
- Chain O
- Large ribosomal subunit protein eL14A
- Chain Q
- Large ribosomal subunit protein uL13A
- Chain U
- Large ribosomal subunit protein eL20A
- Chain h
- Large ribosomal subunit protein eL33A
Coloring options: