IL_8ZEJ_033

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8ZEJ|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_033 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.1203

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8ZEJ|1|A|U|684
8ZEJ|1|A|G|685
8ZEJ|1|A|U|686
8ZEJ|1|A|A|687
8ZEJ|1|A|G|688
*
8ZEJ|1|A|C|699
8ZEJ|1|A|G|700
8ZEJ|1|A|U|701
8ZEJ|1|A|A|702
8ZEJ|1|A|G|703
8ZEJ|1|A|A|704
8ZEJ|1|A|G|705
8ZEJ|1|A|A|706

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain b

Large subunit ribosomal RNA; LSU rRNA