IL_8ZEJ_056

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8ZEJ|1|A|C|1400, 8ZEJ|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_056 not in the Motif Atlas

Geometric match to IL_8CRE_466

Geometric discrepancy: 0.1197

The information below is about IL_8CRE_466

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8ZEJ|1|A|C|1399
8ZEJ|1|A|C|1400
8ZEJ|1|A|G|1401
*
8ZEJ|1|A|C|1501
8ZEJ|1|A|A|1502
8ZEJ|1|A|A|1503
8ZEJ|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain x

mRNA