IL_8ZEJ_106

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8ZEJ|1|b|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_106 not in the Motif Atlas

Geometric match to IL_5J7L_282

Geometric discrepancy: 0.1163

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8ZEJ|1|b|G|1031
8ZEJ|1|b|A|1032
8ZEJ|1|b|U|1033
8ZEJ|1|b|G|1034
*
8ZEJ|1|b|C|1121
8ZEJ|1|b|G|1122
8ZEJ|1|b|C|1123

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain a

5S ribosomal RNA; 5S rRNA

Chain n

50S ribosomal protein L16