IL_8ZEJ_176

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8ZEJ|1|b|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_176 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.1225

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8ZEJ|1|b|C|2636
8ZEJ|1|b|U|2637
8ZEJ|1|b|G|2638
8ZEJ|1|b|A|2639
8ZEJ|1|b|G|2640
*
8ZEJ|1|b|C|2774
8ZEJ|1|b|G|2775
8ZEJ|1|b|A|2776
8ZEJ|1|b|G|2777
8ZEJ|1|b|A|2778
8ZEJ|1|b|U|2779
8ZEJ|1|b|G|2780
8ZEJ|1|b|A|2781
8ZEJ|1|b|G|2782

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain k

50S ribosomal protein L13