IL_8ZGR_028
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8ZGR|1|LA|A|932, 8ZGR|1|LA|G|936
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_028 not in the Motif Atlas
- Homologous match to IL_8CRE_030
- Geometric discrepancy: 0.0602
- The information below is about IL_8CRE_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZGR|1|LA|G|804
8ZGR|1|LA|A|805
8ZGR|1|LA|A|806
8ZGR|1|LA|A|807
8ZGR|1|LA|G|808
*
8ZGR|1|LA|C|930
8ZGR|1|LA|U|931
8ZGR|1|LA|A|932
8ZGR|1|LA|G|933
8ZGR|1|LA|U|934
8ZGR|1|LA|A|935
8ZGR|1|LA|G|936
8ZGR|1|LA|C|937
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Ll
- Large ribosomal subunit protein eL37A
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