IL_8ZGR_039
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_039 not in the Motif Atlas
- Homologous match to IL_8CRE_041
- Geometric discrepancy: 0.075
- The information below is about IL_8CRE_041
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8ZGR|1|LA|G|990
8ZGR|1|LA|A|991
8ZGR|1|LA|G|992
8ZGR|1|LA|G|993
8ZGR|1|LA|U|994
8ZGR|1|LA|A|995
8ZGR|1|LA|A|996
*
8ZGR|1|LA|U|1051
8ZGR|1|LA|A|1052
8ZGR|1|LA|A|1053
8ZGR|1|LA|A|1054
8ZGR|1|LA|U|1055
8ZGR|1|LA|A|1056
8ZGR|1|LA|U|1057
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LI
- Large ribosomal subunit protein uL30A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LV
- Large ribosomal subunit protein eL21A
- Chain Ld
- Large ribosomal subunit protein eL29
Coloring options: