IL_8ZGR_062

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_062 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.0757

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8ZGR|1|LA|G|1443
8ZGR|1|LA|U|1444
8ZGR|1|LA|A|1445
8ZGR|1|LA|G|1446
8ZGR|1|LA|U|1447
8ZGR|1|LA|A|1448
8ZGR|1|LA|G|1449
*
8ZGR|1|LA|C|2353
8ZGR|1|LA|G|2354
8ZGR|1|LA|A|2355
8ZGR|1|LA|A|2356
8ZGR|1|LA|A|2357
8ZGR|1|LA|C|2358

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain LR

Large ribosomal subunit protein uL22A