IL_8ZGR_121

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8ZGR|1|LA|U|3055, 8ZGR|1|LA|U|3057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_121 not in the Motif Atlas

Homologous match to IL_8P9A_346

Geometric discrepancy: 0.0907

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98200.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

8ZGR|1|LA|U|3053
8ZGR|1|LA|U|3054
8ZGR|1|LA|U|3055
8ZGR|1|LA|U|3056
8ZGR|1|LA|U|3057
8ZGR|1|LA|G|3058
*
8ZGR|1|LA|C|3083
8ZGR|1|LA|G|3084
8ZGR|1|LA|A|3085
8ZGR|1|LA|A|3086
8ZGR|1|LA|G|3087

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LY

Large ribosomal subunit protein eL24A

Chain Lf

Large ribosomal subunit protein eL31A