IL_8ZGR_158

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_158 not in the Motif Atlas

Geometric match to IL_8P9A_394

Geometric discrepancy: 0.3684

The information below is about IL_8P9A_394

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8ZGR|1|S2|U|150
8ZGR|1|S2|G|151
8ZGR|1|S2|U|152
*
8ZGR|1|S2|A|162
8ZGR|1|S2|G|163
8ZGR|1|S2|A|164

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain Sd

Small ribosomal subunit protein eS24A