IL_8ZGY_038

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGAAU*AAAC

Length

10 nucleotides

Bulged bases

8ZGY|1|LA|G|1000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_038 not in the Motif Atlas

Homologous match to IL_8CRE_043

Geometric discrepancy: 0.0673

The information below is about IL_8CRE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8ZGY|1|LA|G|998
8ZGY|1|LA|C|999
8ZGY|1|LA|G|1000
8ZGY|1|LA|A|1001
8ZGY|1|LA|A|1002
8ZGY|1|LA|U|1003
*
8ZGY|1|LA|A|1045
8ZGY|1|LA|A|1046
8ZGY|1|LA|A|1047
8ZGY|1|LA|C|1048

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LG

Large ribosomal subunit protein uL18

Chain LL

Large ribosomal subunit protein uL16

Chain LV

Large ribosomal subunit protein eL21A