IL_8ZGY_064

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_064 not in the Motif Atlas

Homologous match to IL_8CRE_072

Geometric discrepancy: 0.0921

The information below is about IL_8CRE_072

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8ZGY|1|LA|U|1644
8ZGY|1|LA|G|1645
8ZGY|1|LA|A|1646
8ZGY|1|LA|A|1647
8ZGY|1|LA|U|1648
*
8ZGY|1|LA|A|1805
8ZGY|1|LA|G|1806
8ZGY|1|LA|G|1807
8ZGY|1|LA|A|1808
8ZGY|1|LA|A|1809

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Lb

Large ribosomal subunit protein eL27A

Chain Li

Large ribosomal subunit protein eL34A