3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UUGA*UACA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8ZGY_097 not in the Motif Atlas
Homologous match to IL_8P9A_327
Geometric discrepancy: 0.0885
The information below is about IL_8P9A_327
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8ZGY|1|LA|U|2717
8ZGY|1|LA|U|2718
8ZGY|1|LA|G|2719
8ZGY|1|LA|A|2720
*
8ZGY|1|LA|U|2734
8ZGY|1|LA|A|2735
8ZGY|1|LA|C|2736
8ZGY|1|LA|A|2737

Current chains

Chain LA
25S rRNA (3393-MER)

Nearby chains

Chain LG
Large ribosomal subunit protein uL18
Chain LS
Large ribosomal subunit protein eL18A
Chain LV
Large ribosomal subunit protein eL21A
Chain Ld
Large ribosomal subunit protein eL29
Chain Lq
Large ribosomal subunit protein eL42A

Coloring options:


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