IL_8ZGY_116

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8ZGY|1|LA|U|3055, 8ZGY|1|LA|U|3057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_116 not in the Motif Atlas

Homologous match to IL_8P9A_346

Geometric discrepancy: 0.0734

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21001.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

8ZGY|1|LA|U|3053
8ZGY|1|LA|U|3054
8ZGY|1|LA|U|3055
8ZGY|1|LA|U|3056
8ZGY|1|LA|U|3057
8ZGY|1|LA|G|3058
*
8ZGY|1|LA|C|3083
8ZGY|1|LA|G|3084
8ZGY|1|LA|A|3085
8ZGY|1|LA|A|3086
8ZGY|1|LA|G|3087

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LY

Large ribosomal subunit protein eL24A

Chain Lf

Large ribosomal subunit protein eL31A