IL_8ZGY_152

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

8ZGY|1|S2|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_152 not in the Motif Atlas

Geometric match to IL_1J9H_005

Geometric discrepancy: 0.2438

The information below is about IL_1J9H_005

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8ZGY|1|S2|U|113
8ZGY|1|S2|C|114
8ZGY|1|S2|G|115
8ZGY|1|S2|U|116
*
8ZGY|1|S2|A|300
8ZGY|1|S2|A|301

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SV

Small ribosomal subunit protein eS8A

Chain SX

Small ribosomal subunit protein uS17A