IL_8ZGY_187

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_187 not in the Motif Atlas

Geometric match to IL_8P9A_421

Geometric discrepancy: 0.0779

The information below is about IL_8P9A_421

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8ZGY|1|S2|G|885
8ZGY|1|S2|U|886
8ZGY|1|S2|A|887
8ZGY|1|S2|U|888
*
8ZGY|1|S2|A|924
8ZGY|1|S2|G|925
8ZGY|1|S2|A|926
8ZGY|1|S2|C|927

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Lr

Large ribosomal subunit protein eL43A

Chain SQ

Small ribosomal subunit protein eS1A

Chain SZ

Small ribosomal subunit protein uS11B

Chain Se

Small ribosomal subunit protein eS26B