IL_8ZGY_189
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_189 not in the Motif Atlas
- Geometric match to IL_8CRE_437
- Geometric discrepancy: 0.0876
- The information below is about IL_8CRE_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_97273.1
- Basepair signature
- cWW-tSH-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8ZGY|1|S2|G|985
8ZGY|1|S2|G|986
8ZGY|1|S2|G|987
8ZGY|1|S2|A|988
8ZGY|1|S2|U|989
8ZGY|1|S2|C|990
*
8ZGY|1|S2|G|1014
8ZGY|1|S2|U|1015
8ZGY|1|S2|C|1016
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain Lr
- Large ribosomal subunit protein eL43A
- Chain SZ
- Small ribosomal subunit protein uS11B
- Chain Se
- Small ribosomal subunit protein eS26B
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