3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGA*UCUUUGG
Length
10 nucleotides
Bulged bases
8ZGY|1|S2|C|1096, 8ZGY|1|S2|U|1098, 8ZGY|1|S2|G|1100
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8ZGY_191 not in the Motif Atlas
Geometric match to IL_8CRE_439
Geometric discrepancy: 0.1151
The information below is about IL_8CRE_439
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_82706.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

8ZGY|1|S2|C|1034
8ZGY|1|S2|G|1035
8ZGY|1|S2|A|1036
*
8ZGY|1|S2|U|1095
8ZGY|1|S2|C|1096
8ZGY|1|S2|U|1097
8ZGY|1|S2|U|1098
8ZGY|1|S2|U|1099
8ZGY|1|S2|G|1100
8ZGY|1|S2|G|1101

Current chains

Chain S2
chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SR
Small ribosomal subunit protein uS5
Chain SX
Small ribosomal subunit protein uS17A
Chain SY
Small ribosomal subunit protein uS15
Chain Sa
Small ribosomal subunit protein eS21A
Chain Sb
Small ribosomal subunit protein uS8A
Chain Sc
Small ribosomal subunit protein uS12A
Chain Sf
Small ribosomal subunit protein eS27A

Coloring options:


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