IL_8ZGY_218

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8ZGY|1|S2|C|1637, 8ZGY|1|S2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_218 not in the Motif Atlas

Geometric match to IL_8CRE_466

Geometric discrepancy: 0.0934

The information below is about IL_8CRE_466

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8ZGY|1|S2|C|1636
8ZGY|1|S2|C|1637
8ZGY|1|S2|G|1638
*
8ZGY|1|S2|C|1764
8ZGY|1|S2|A|1765
8ZGY|1|S2|A|1766
8ZGY|1|S2|G|1767

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain Se

Small ribosomal subunit protein eS26B

Chain Tb

Transfer RNA; tRNA

Chain mR

RNA (5'-R(P*GP*AP*UP*CP*CP*UP*UP*AP*AP*C)-3')