IL_8ZGY_221

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|S2|C|1644
8ZGY|1|S2|G|1645
8ZGY|1|S2|C|1646
8ZGY|1|S2|U|1647
*
8ZGY|1|S2|A|1753
8ZGY|1|S2|A|1754
8ZGY|1|S2|A|1755
8ZGY|1|S2|A|1756
8ZGY|1|S2|G|1757

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain Lp

Large ribosomal subunit protein eL41A

Chain Sc

Small ribosomal subunit protein uS12A

Chain Sg

Small ribosomal subunit protein eS30A

Chain mR

RNA (5'-R(P*GP*AP*UP*CP*CP*UP*UP*AP*AP*C)-3')