IL_8ZH3_008

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAC*GUG

Length

7 nucleotides

Bulged bases

8ZH3|1|LA|A|165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_008 not in the Motif Atlas

Geometric match to IL_2QEK_001

Geometric discrepancy: 0.395

The information below is about IL_2QEK_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8ZH3|1|LA|C|163
8ZH3|1|LA|A|164
8ZH3|1|LA|A|165
8ZH3|1|LA|C|166
*
8ZH3|1|LA|G|256
8ZH3|1|LA|U|257
8ZH3|1|LA|G|258

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LN

Large ribosomal subunit protein eL13A

Chain Lj

Large ribosomal subunit protein uL29A