IL_8ZH3_039
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8ZH3|1|LA|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_039 not in the Motif Atlas
- Homologous match to IL_8CRE_043
- Geometric discrepancy: 0.0696
- The information below is about IL_8CRE_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ZH3|1|LA|G|999
8ZH3|1|LA|C|1000
8ZH3|1|LA|G|1001
8ZH3|1|LA|A|1002
8ZH3|1|LA|A|1003
8ZH3|1|LA|U|1004
*
8ZH3|1|LA|A|1046
8ZH3|1|LA|A|1047
8ZH3|1|LA|A|1048
8ZH3|1|LA|C|1049
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LG
- Large ribosomal subunit protein uL18
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LV
- Large ribosomal subunit protein eL21A
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