IL_8ZH3_064
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCUUC*GGAAUA
- Length
- 11 nucleotides
- Bulged bases
- 8ZH3|1|LA|U|1629, 8ZH3|1|LA|A|1813, 8ZH3|1|LA|U|1815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_064 not in the Motif Atlas
- Homologous match to IL_8CRE_071
- Geometric discrepancy: 0.5267
- The information below is about IL_8CRE_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56317.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8ZH3|1|LA|U|1627
8ZH3|1|LA|C|1628
8ZH3|1|LA|U|1629
8ZH3|1|LA|U|1630
8ZH3|1|LA|C|1631
*
8ZH3|1|LA|G|1811
8ZH3|1|LA|G|1812
8ZH3|1|LA|A|1813
8ZH3|1|LA|A|1814
8ZH3|1|LA|U|1815
8ZH3|1|LA|A|1816
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain Lb
- Large ribosomal subunit protein eL27A
Coloring options: