IL_8ZH3_075

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_075 not in the Motif Atlas

Geometric match to IL_8CRE_082

Geometric discrepancy: 0.0531

The information below is about IL_8CRE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8ZH3|1|LA|G|1898
8ZH3|1|LA|G|1899
8ZH3|1|LA|A|1900
8ZH3|1|LA|A|1901
8ZH3|1|LA|G|1902
8ZH3|1|LA|U|1903
8ZH3|1|LA|C|1904
8ZH3|1|LA|G|1905
8ZH3|1|LA|G|1906
*
8ZH3|1|LA|C|2333
8ZH3|1|LA|U|2334
8ZH3|1|LA|G|2335
8ZH3|1|LA|U|2336
8ZH3|1|LA|C|2337

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LX

Large ribosomal subunit protein uL14A