IL_8ZH3_134

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8ZH3|1|LA|U|3354, 8ZH3|1|LA|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_134 not in the Motif Atlas

Homologous match to IL_8CRE_142

Geometric discrepancy: 0.3085

The information below is about IL_8CRE_142

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8ZH3|1|LA|C|3349
8ZH3|1|LA|C|3350
*
8ZH3|1|LA|G|3353
8ZH3|1|LA|U|3354
8ZH3|1|LA|U|3355
8ZH3|1|LA|G|3356

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain SV

Small ribosomal subunit protein eS8A