IL_8ZH3_209
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8ZH3|1|S2|C|1274, 8ZH3|1|S2|U|1432, 8ZH3|1|S2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_209 not in the Motif Atlas
- Geometric match to IL_8P9A_439
- Geometric discrepancy: 0.0969
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8ZH3|1|S2|U|1272
8ZH3|1|S2|G|1273
8ZH3|1|S2|C|1274
8ZH3|1|S2|A|1275
8ZH3|1|S2|U|1276
8ZH3|1|S2|G|1277
8ZH3|1|S2|G|1278
*
8ZH3|1|S2|U|1430
8ZH3|1|S2|C|1431
8ZH3|1|S2|U|1432
8ZH3|1|S2|G|1433
8ZH3|1|S2|U|1434
8ZH3|1|S2|G|1435
8ZH3|1|S2|A|1436
8ZH3|1|S2|U|1437
8ZH3|1|S2|G|1438
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SC
- Small ribosomal subunit protein eS10A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain Ta
- Transfer RNA; tRNA
- Chain mR
- RNA (5'-R(P*AP*UP*UP*GP*AP*CP*CP*CP*UP*U)-3')
Coloring options: