IL_8ZH3_214
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 8ZH3|1|S2|U|1340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_214 not in the Motif Atlas
- Geometric match to IL_8P9A_444
- Geometric discrepancy: 0.13
- The information below is about IL_8P9A_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
8ZH3|1|S2|C|1339
8ZH3|1|S2|U|1340
8ZH3|1|S2|A|1341
8ZH3|1|S2|C|1342
*
8ZH3|1|S2|G|1383
8ZH3|1|S2|A|1384
8ZH3|1|S2|G|1385
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SG
- Small ribosomal subunit protein eS17A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SO
- Small ribosomal subunit protein RACK1
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