IL_8ZHC_069
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGAAU*AGGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_069 not in the Motif Atlas
- Homologous match to IL_8CRE_072
- Geometric discrepancy: 0.1311
- The information below is about IL_8CRE_072
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8ZHC|1|LA|U|1644
8ZHC|1|LA|G|1645
8ZHC|1|LA|A|1646
8ZHC|1|LA|A|1647
8ZHC|1|LA|U|1648
*
8ZHC|1|LA|A|1805
8ZHC|1|LA|G|1806
8ZHC|1|LA|G|1807
8ZHC|1|LA|A|1808
8ZHC|1|LA|A|1809
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LJ
- Large ribosomal subunit protein eL8A
- Chain Lb
- Large ribosomal subunit protein eL27A
- Chain Li
- Large ribosomal subunit protein eL34A
Coloring options: