IL_8ZHC_079

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_079 not in the Motif Atlas

Geometric match to IL_8CRE_082

Geometric discrepancy: 0.0533

The information below is about IL_8CRE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8ZHC|1|LA|G|1897
8ZHC|1|LA|G|1898
8ZHC|1|LA|A|1899
8ZHC|1|LA|A|1900
8ZHC|1|LA|G|1901
8ZHC|1|LA|U|1902
8ZHC|1|LA|C|1903
8ZHC|1|LA|G|1904
8ZHC|1|LA|G|1905
*
8ZHC|1|LA|C|2332
8ZHC|1|LA|U|2333
8ZHC|1|LA|G|2334
8ZHC|1|LA|U|2335
8ZHC|1|LA|C|2336

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LX

Large ribosomal subunit protein uL14A

Chain S2

Small subunit ribosomal RNA; SSU rRNA