IL_8ZHC_178

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_178 not in the Motif Atlas

Geometric match to IL_8CRE_421

Geometric discrepancy: 0.131

The information below is about IL_8CRE_421

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8ZHC|1|S2|A|550
8ZHC|1|S2|G|551
8ZHC|1|S2|G|552
8ZHC|1|S2|G|553
8ZHC|1|S2|C|554
8ZHC|1|S2|A|555
8ZHC|1|S2|A|556
8ZHC|1|S2|G|557
*
8ZHC|1|S2|C|587
8ZHC|1|S2|U|588

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SR

Small ribosomal subunit protein uS5

Chain SW

Small ribosomal subunit protein uS4A

Chain Sg

Small ribosomal subunit protein eS30A