IL_8ZHC_196
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8ZHC|1|S2|C|1096, 8ZHC|1|S2|U|1098, 8ZHC|1|S2|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_196 not in the Motif Atlas
- Geometric match to IL_8CRE_439
- Geometric discrepancy: 0.0789
- The information below is about IL_8CRE_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8ZHC|1|S2|C|1034
8ZHC|1|S2|G|1035
8ZHC|1|S2|A|1036
*
8ZHC|1|S2|U|1095
8ZHC|1|S2|C|1096
8ZHC|1|S2|U|1097
8ZHC|1|S2|U|1098
8ZHC|1|S2|U|1099
8ZHC|1|S2|G|1100
8ZHC|1|S2|G|1101
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SR
- Small ribosomal subunit protein uS5
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sf
- Small ribosomal subunit protein eS27A
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