IL_8ZHC_197
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_197 not in the Motif Atlas
- Geometric match to IL_8CRE_440
- Geometric discrepancy: 0.0849
- The information below is about IL_8CRE_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8ZHC|1|S2|G|1041
8ZHC|1|S2|G|1042
8ZHC|1|S2|A|1043
8ZHC|1|S2|U|1044
*
8ZHC|1|S2|G|1074
8ZHC|1|S2|C|1075
8ZHC|1|S2|A|1076
8ZHC|1|S2|C|1077
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS2A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Se
- Small ribosomal subunit protein eS26B
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