IL_8ZHC_218
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 8ZHC|1|S2|C|1637, 8ZHC|1|S2|A|1766
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_218 not in the Motif Atlas
- Geometric match to IL_8CRE_466
- Geometric discrepancy: 0.079
- The information below is about IL_8CRE_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18228.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8ZHC|1|S2|C|1636
8ZHC|1|S2|C|1637
8ZHC|1|S2|G|1638
*
8ZHC|1|S2|C|1764
8ZHC|1|S2|A|1765
8ZHC|1|S2|A|1766
8ZHC|1|S2|G|1767
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain Se
- Small ribosomal subunit protein eS26B
- Chain Ta
- Transfer RNA; tRNA
- Chain eR
- Eukaryotic peptide chain release factor subunit 1
- Chain mR
- RNA (5'-R(P*GP*AP*CP*CP*CP*UP*UP*AP*AP*C)-3')
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