3D structure

PDB id
9AZN (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human A/P-P/E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.98 Å

Loop

Sequence
GCGAAU*AAAC
Length
10 nucleotides
Bulged bases
9AZN|1|L5|G|1741
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9AZN_069 not in the Motif Atlas
Homologous match to IL_8CRE_043
Geometric discrepancy: 0.1129
The information below is about IL_8CRE_043
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_26222.2
Basepair signature
cWW-cWS-cSH-tWH-R-L-R-cWW
Number of instances in this motif group
6

Unit IDs

9AZN|1|L5|G|1739
9AZN|1|L5|C|1740
9AZN|1|L5|G|1741
9AZN|1|L5|A|1742
9AZN|1|L5|A|1743
9AZN|1|L5|U|1744
*
9AZN|1|L5|A|1786
9AZN|1|L5|A|1787
9AZN|1|L5|A|1788
9AZN|1|L5|C|1789

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LD
Large ribosomal subunit protein uL18
Chain LI
60S ribosomal protein L10-like [Homo sapiens]
Chain LT
60S ribosomal protein L21

Coloring options:


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