IL_9AZN_190
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GUUAUGGU*AACGUC
- Length
- 14 nucleotides
- Bulged bases
- 9AZN|1|S3|G|113, 9AZN|1|S3|G|114
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZN_190 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3994
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9AZN|1|S3|G|108
9AZN|1|S3|U|109
9AZN|1|S3|U|110
9AZN|1|S3|A|111
9AZN|1|S3|U|112
9AZN|1|S3|G|113
9AZN|1|S3|G|114
9AZN|1|S3|U|115
*
9AZN|1|S3|A|348
9AZN|1|S3|A|349
9AZN|1|S3|C|350
9AZN|1|S3|G|351
9AZN|1|S3|U|352
9AZN|1|S3|C|353
Current chains
- Chain S3
- 18S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
Coloring options: