IL_9AZN_201
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9AZN|1|S3|U|361, 9AZN|1|S3|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZN_201 not in the Motif Atlas
- Homologous match to IL_8CRE_408
- Geometric discrepancy: 0.0834
- The information below is about IL_8CRE_408
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9AZN|1|S3|U|359
9AZN|1|S3|A|360
9AZN|1|S3|U|361
9AZN|1|S3|C|362
9AZN|1|S3|A|363
9AZN|1|S3|A|364
*
9AZN|1|S3|U|396
9AZN|1|S3|G|397
9AZN|1|S3|A|398
9AZN|1|S3|C|399
9AZN|1|S3|C|400
9AZN|1|S3|A|401
9AZN|1|S3|C|402
9AZN|1|S3|G|403
Current chains
- Chain S3
- 18S rRNA
Nearby chains
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
- Chain SX
- 40S ribosomal protein S23
Coloring options: