3D structure

PDB id
9AZN (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human A/P-P/E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.98 Å

Loop

Sequence
CGUAG*UCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9AZN_216 not in the Motif Atlas
Homologous match to IL_8CRE_426
Geometric discrepancy: 0.0672
The information below is about IL_8CRE_426
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_05821.1
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
17

Unit IDs

9AZN|1|S3|C|676
9AZN|1|S3|G|677
9AZN|1|S3|U|678
9AZN|1|S3|A|679
9AZN|1|S3|G|680
*
9AZN|1|S3|U|1025
9AZN|1|S3|C|1026
9AZN|1|S3|A|1027
9AZN|1|S3|A|1028
9AZN|1|S3|G|1029

Current chains

Chain S3
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain SL
40S ribosomal protein S11
Chain SN
40S ribosomal protein S13
Chain SW
40S ribosomal protein S15a
Chain SX
40S ribosomal protein S23

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