IL_9AZN_231
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZN_231 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3638
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9AZN|1|S3|C|1098
9AZN|1|S3|G|1099
9AZN|1|S3|A|1100
9AZN|1|S3|U|1101
9AZN|1|S3|G|1102
9AZN|1|S3|C|1103
*
9AZN|1|S3|G|1129
9AZN|1|S3|G|1130
9AZN|1|S3|G|1131
9AZN|1|S3|C|1132
9AZN|1|S3|A|1133
9AZN|1|S3|G|1134
Current chains
- Chain S3
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein SA
- Chain SB
- 40S ribosomal protein S3a
- Chain SN
- 40S ribosomal protein S13
- Chain SR
- 40S ribosomal protein S17
- Chain Sa
- 40S ribosomal protein S26
- Chain Sb
- Small ribosomal subunit protein eS27
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