IL_9B0S_024

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

9B0S|1|L5|G|483, 9B0S|1|L5|U|484

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_024 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.228

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9B0S|1|L5|G|482
9B0S|1|L5|G|483
9B0S|1|L5|U|484
9B0S|1|L5|C|485
*
9B0S|1|L5|G|671
9B0S|1|L5|C|672

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Lr

60S ribosomal protein L28