IL_9B0S_070
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9B0S|1|L5|G|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_070 not in the Motif Atlas
- Homologous match to IL_8CRE_043
- Geometric discrepancy: 0.1235
- The information below is about IL_8CRE_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9B0S|1|L5|G|1739
9B0S|1|L5|C|1740
9B0S|1|L5|G|1741
9B0S|1|L5|A|1742
9B0S|1|L5|A|1743
9B0S|1|L5|U|1744
*
9B0S|1|L5|A|1786
9B0S|1|L5|A|1787
9B0S|1|L5|A|1788
9B0S|1|L5|C|1789
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LI
- Ribosomal protein uL16-like
- Chain LT
- 60S ribosomal protein L21
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